Variant report

Variant	rs16857350
Chromosome Location	chr3:110614917-110614918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10511291	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10755069	0.92[ASN][1000 genomes]
rs12493974	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1350930	0.90[ASN][1000 genomes]
rs1350932	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1350979	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1381830	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1381833	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1381834	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381835	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462299	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1462308	0.90[ASN][1000 genomes]
rs1462326	0.98[ASN][1000 genomes]
rs1462798	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1462802	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1542513	0.90[ASN][1000 genomes]
rs1599576	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16857358	0.94[ASN][1000 genomes]
rs16857373	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16857536	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1870926	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2045784	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169497	0.92[ASN][1000 genomes]
rs2169565	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2219706	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2399364	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399369	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399373	0.85[CEU][hapmap]
rs4682024	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4682025	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4682027	0.96[ASN][1000 genomes]
rs4682229	0.85[CEU][hapmap]
rs4682230	0.85[CEU][hapmap]
rs4682231	0.85[CEU][hapmap]
rs60037602	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6437934	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66624862	0.82[EUR][1000 genomes]
rs6763050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6805467	0.85[ASN][1000 genomes]
rs72934030	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934034	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72934100	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935934	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72935952	0.82[EUR][1000 genomes]
rs72935959	0.82[EUR][1000 genomes]
rs72935966	0.82[EUR][1000 genomes]
rs72935968	0.82[EUR][1000 genomes]
rs72935975	0.82[EUR][1000 genomes]
rs72935989	0.82[EUR][1000 genomes]
rs72935999	0.82[EUR][1000 genomes]
rs72937905	0.82[EUR][1000 genomes]
rs72948740	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72948795	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72948800	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7433877	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs7612667	0.85[CEU][hapmap]
rs7629008	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7648752	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7650516	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs768686	0.85[ASN][1000 genomes]
rs873132	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs873133	0.82[EUR][1000 genomes]
rs9288918	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[GIH][hapmap]
rs936512	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs969940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9828260	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9828899	0.85[CEU][hapmap]
rs9839231	0.96[EUR][1000 genomes]
rs9876350	0.85[CEU][hapmap]
rs9881407	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9883216	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762345	chr3:110614389-110668843	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110607800-110619600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:110608200-110618400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:110611400-110628600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:110612600-110635600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:110614200-110621200	Weak transcription	Liver	Liver
6	chr3:110614400-110615000	Enhancers	Fetal Intestine Small	intestine

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