Variant report

Variant	rs72935989
Chromosome Location	chr3:110800763-110800764
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10511291	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1351049	0.86[ASN][1000 genomes]
rs1382077	0.86[ASN][1000 genomes]
rs1462299	0.82[EUR][1000 genomes]
rs1477846	0.94[ASN][1000 genomes]
rs1477848	0.94[ASN][1000 genomes]
rs1477850	0.86[ASN][1000 genomes]
rs16857350	0.82[EUR][1000 genomes]
rs16857536	0.82[EUR][1000 genomes]
rs16857689	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2126714	0.98[ASN][1000 genomes]
rs2399376	0.86[ASN][1000 genomes]
rs57043424	0.90[ASN][1000 genomes]
rs58184851	0.86[ASN][1000 genomes]
rs60037602	0.82[EUR][1000 genomes]
rs60585479	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs66624862	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72934030	0.82[EUR][1000 genomes]
rs72934034	0.82[EUR][1000 genomes]
rs72934100	0.82[EUR][1000 genomes]
rs72935934	0.82[EUR][1000 genomes]
rs72935952	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935959	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935966	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935968	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935975	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935999	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72937905	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72937910	0.86[ASN][1000 genomes]
rs72937915	0.86[ASN][1000 genomes]
rs72937922	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72937952	0.90[ASN][1000 genomes]
rs72937960	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72937968	0.90[ASN][1000 genomes]
rs72937972	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72948795	0.82[EUR][1000 genomes]
rs72948800	0.82[EUR][1000 genomes]
rs7431474	0.85[AFR][1000 genomes]
rs7433877	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7648752	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs873132	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs873133	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9288918	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9288919	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9853370	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9882945	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110792600-110802200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:110792600-110803600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:110794200-110800800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:110794200-110801600	Weak transcription	Ovary	ovary
5	chr3:110794200-110802200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:110794200-110809200	Weak transcription	Fetal Brain Male	brain
7	chr3:110794400-110813600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:110794800-110804600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr3:110794800-110805200	Enhancers	Dnd41	blood
10	chr3:110795000-110801200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr3:110795600-110801200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr3:110796000-110804600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:110796200-110801200	Enhancers	NHDF-Ad	bronchial
14	chr3:110796200-110806800	Weak transcription	Small Intestine	intestine
15	chr3:110796600-110803600	Weak transcription	HepG2	liver
16	chr3:110796800-110801200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:110797000-110801200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:110797200-110801000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:110797400-110801000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:110797800-110800800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:110797800-110801400	Enhancers	Liver	Liver
22	chr3:110798400-110800800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:110798400-110801200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr3:110798400-110801800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:110798800-110803600	Weak transcription	Fetal Intestine Large	intestine
26	chr3:110799000-110807000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:110799000-110807000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:110799400-110800800	Enhancers	Colon Smooth Muscle	Colon
29	chr3:110799400-110802000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:110799600-110801200	Enhancers	Fetal Lung	lung
31	chr3:110799600-110801400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:110799800-110800800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr3:110799800-110820600	Weak transcription	A549	lung
34	chr3:110800000-110802600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:110800000-110803200	Weak transcription	Fetal Intestine Small	intestine
36	chr3:110800000-110803600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:110800000-110804200	Weak transcription	Stomach Mucosa	stomach
38	chr3:110800200-110803800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr3:110800200-110812400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:110800200-110817200	Weak transcription	Gastric	stomach
41	chr3:110800400-110800800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr3:110800400-110803800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:110800400-110804200	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr3:110800600-110803400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr3:110800600-110803800	Weak transcription	Osteobl	bone

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