Variant report

Variant	rs72937922
Chromosome Location	chr3:110846950-110846951
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11929280	0.83[EUR][1000 genomes]
rs1351049	1.00[ASN][1000 genomes]
rs1382077	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477846	0.92[ASN][1000 genomes]
rs1477848	0.92[ASN][1000 genomes]
rs1477850	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16857689	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126714	0.88[ASN][1000 genomes]
rs2399376	1.00[ASN][1000 genomes]
rs35441599	0.83[EUR][1000 genomes]
rs57043424	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58184851	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60585479	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72935989	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72935999	0.88[ASN][1000 genomes]
rs72937905	0.88[ASN][1000 genomes]
rs72937910	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937915	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937952	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72937960	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72937968	0.96[ASN][1000 genomes]
rs72937972	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7431474	0.81[AFR][1000 genomes]
rs7433877	0.88[ASN][1000 genomes]
rs7648752	0.88[ASN][1000 genomes]
rs873132	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9288918	0.88[ASN][1000 genomes]
rs9288919	0.88[ASN][1000 genomes]
rs9853370	0.92[ASN][1000 genomes]
rs9882945	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv591276	chr3:110822496-110854196	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv877338	chr3:110824425-110860188	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv1008308	chr3:110836281-110885834	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv963531	chr3:110844919-110856568	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110816000-110873800	Weak transcription	Left Ventricle	heart
2	chr3:110816000-110893400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:110817400-110855200	Weak transcription	Pancreas	Pancrea
4	chr3:110819200-110857200	Weak transcription	NHLF	lung
5	chr3:110826800-110847600	Weak transcription	A549	lung
6	chr3:110826800-110884200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:110827000-110847400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:110827800-110849200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:110828000-110851400	Weak transcription	Aorta	Aorta
10	chr3:110829400-110893400	Weak transcription	HUVEC	blood vessel
11	chr3:110830400-110852800	Weak transcription	NH-A	brain
12	chr3:110830600-110854200	Weak transcription	Right Ventricle	heart
13	chr3:110830800-110852400	Weak transcription	Fetal Brain Male	brain
14	chr3:110830800-110853800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:110832000-110854600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:110832000-110854600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:110832000-110856600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:110832200-110847200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:110832200-110852400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:110832200-110853600	Weak transcription	HSMMtube	muscle
21	chr3:110832200-110881800	Weak transcription	Small Intestine	intestine
22	chr3:110832200-110892400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:110832400-110911200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr3:110832800-110852400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr3:110833600-110855400	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:110834000-110891800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:110834400-110852400	Weak transcription	Ovary	ovary
28	chr3:110835600-110929600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr3:110836200-110848400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:110836200-110872800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr3:110837200-110854400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr3:110838200-110847200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:110838200-110847600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:110838200-110847800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:110838200-110848600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:110838400-110847600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr3:110838400-110880200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr3:110840200-110848000	Strong transcription	Dnd41	blood
39	chr3:110841000-110847200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr3:110842400-110847400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr3:110842600-110852400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr3:110842600-110852400	Weak transcription	Fetal Heart	heart
43	chr3:110842600-110911200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:110843000-110852400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr3:110843000-110857400	Weak transcription	Adipose Nuclei	Adipose
46	chr3:110843800-110852400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr3:110844000-110847200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:110845000-110847000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:110845000-110848000	Strong transcription	Liver	Liver
50	chr3:110845000-110848000	Strong transcription	Fetal Lung	lung

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