Variant report

Variant	rs9853370
Chromosome Location	chr3:110823236-110823237
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11929280	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1351049	0.92[ASN][1000 genomes]
rs1382077	0.92[ASN][1000 genomes]
rs1477846	1.00[ASN][1000 genomes]
rs1477848	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1477850	0.92[ASN][1000 genomes]
rs16857689	0.92[ASN][1000 genomes]
rs2126714	0.96[ASN][1000 genomes]
rs2399376	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs35441599	0.82[AFR][1000 genomes]
rs57043424	0.96[ASN][1000 genomes]
rs58184851	0.92[ASN][1000 genomes]
rs60585479	0.96[ASN][1000 genomes]
rs66624862	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72935952	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72935959	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72935966	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72935968	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72935975	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72935989	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72935999	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72937905	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72937910	0.92[ASN][1000 genomes]
rs72937915	0.92[ASN][1000 genomes]
rs72937922	0.92[ASN][1000 genomes]
rs72937952	0.96[ASN][1000 genomes]
rs72937960	0.96[ASN][1000 genomes]
rs72937968	0.96[ASN][1000 genomes]
rs72937972	0.96[ASN][1000 genomes]
rs7433877	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7648752	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs873132	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs873133	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9288918	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9288919	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9882945	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv591276	chr3:110822496-110854196	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110805000-110833600	Weak transcription	NHDF-Ad	bronchial
2	chr3:110816000-110827200	Weak transcription	Ovary	ovary
3	chr3:110816000-110837600	Weak transcription	Fetal Stomach	stomach
4	chr3:110816000-110873800	Weak transcription	Left Ventricle	heart
5	chr3:110816000-110893400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:110817400-110855200	Weak transcription	Pancreas	Pancrea
7	chr3:110817600-110837600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:110818600-110824600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:110819200-110857200	Weak transcription	NHLF	lung
10	chr3:110820000-110827400	Weak transcription	Small Intestine	intestine
11	chr3:110820800-110824200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:110820800-110824200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:110821000-110824400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:110822600-110823400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:110822600-110823400	ZNF genes & repeats	Fetal Lung	lung
16	chr3:110822800-110824200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:110822800-110826400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:110823200-110823400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:110823200-110823400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:110823200-110823400	Enhancers	Liver	Liver
21	chr3:110823200-110823400	ZNF genes & repeats	Fetal Intestine Small	intestine
22	chr3:110823200-110824200	Weak transcription	Dnd41	blood

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