Variant report

Variant	rs72934030
Chromosome Location	chr3:110660842-110660843
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10511291	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12493974	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1350932	0.82[EUR][1000 genomes]
rs1350979	0.96[EUR][1000 genomes]
rs1381830	0.96[EUR][1000 genomes]
rs1381833	0.96[EUR][1000 genomes]
rs1381834	0.96[EUR][1000 genomes]
rs1381835	0.96[EUR][1000 genomes]
rs1381836	0.96[EUR][1000 genomes]
rs1462299	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1462798	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1462802	0.96[EUR][1000 genomes]
rs1599576	0.96[EUR][1000 genomes]
rs16857350	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16857373	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16857536	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1870926	0.96[EUR][1000 genomes]
rs2045784	0.96[EUR][1000 genomes]
rs2169565	0.96[EUR][1000 genomes]
rs2219706	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2399364	0.96[EUR][1000 genomes]
rs2399369	0.96[EUR][1000 genomes]
rs4682024	0.96[EUR][1000 genomes]
rs4682025	0.96[EUR][1000 genomes]
rs60037602	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6437934	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs66624862	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6763050	0.96[EUR][1000 genomes]
rs6805467	0.89[ASN][1000 genomes]
rs72934034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72934100	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72935934	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72935952	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72935959	0.82[EUR][1000 genomes]
rs72935966	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72935968	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72935975	0.82[EUR][1000 genomes]
rs72935989	0.82[EUR][1000 genomes]
rs72935999	0.82[EUR][1000 genomes]
rs72937905	0.82[EUR][1000 genomes]
rs72948740	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72948795	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72948800	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7433877	0.82[EUR][1000 genomes]
rs7629008	0.96[EUR][1000 genomes]
rs7650516	0.96[EUR][1000 genomes]
rs768686	0.89[ASN][1000 genomes]
rs873132	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs873133	0.82[EUR][1000 genomes]
rs936512	0.96[EUR][1000 genomes]
rs969940	0.96[EUR][1000 genomes]
rs9828260	0.96[EUR][1000 genomes]
rs9839231	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9881407	0.96[EUR][1000 genomes]
rs9883216	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2762345	chr3:110614389-110668843	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829674	chr3:110616256-110771049	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110650800-110666600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:110654400-110662600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:110660400-110662800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links