Variant report

Variant	rs7650516
Chromosome Location	chr3:110578809-110578810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10511291	0.96[EUR][1000 genomes]
rs10755069	0.94[ASN][1000 genomes]
rs12493974	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1350930	0.92[ASN][1000 genomes]
rs1350932	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1350979	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381830	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381833	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381834	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1381835	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1381836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1462299	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1462308	0.92[ASN][1000 genomes]
rs1462326	1.00[ASN][1000 genomes]
rs1462798	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1462802	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1542513	0.92[ASN][1000 genomes]
rs1599576	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16857350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16857358	0.92[ASN][1000 genomes]
rs16857373	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16857536	0.96[EUR][1000 genomes]
rs1870926	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045784	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2169497	0.94[ASN][1000 genomes]
rs2169565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219706	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2399364	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2399369	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4682024	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682025	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4682027	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60037602	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437934	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6763050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6805467	0.83[ASN][1000 genomes]
rs72934030	0.96[EUR][1000 genomes]
rs72934034	0.96[EUR][1000 genomes]
rs72934100	0.96[EUR][1000 genomes]
rs72935934	0.96[EUR][1000 genomes]
rs72948740	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72948795	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72948800	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768686	0.83[ASN][1000 genomes]
rs936512	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs969940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9828260	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9839231	1.00[EUR][1000 genomes]
rs9881407	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9883216	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110556400-110587200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:110578200-110579000	Enhancers	Pancreas	Pancrea

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