Variant report

Variant	rs4682027
Chromosome Location	chr3:110603245-110603246
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10755069	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12493974	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1350930	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1350932	0.87[ASN][1000 genomes]
rs1350979	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1381830	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1381833	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1381834	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1381835	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1381836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1462299	0.94[ASN][1000 genomes]
rs1462308	0.87[ASN][1000 genomes]
rs1462326	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1462798	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1462802	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1542513	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1599576	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16857350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16857358	0.90[ASN][1000 genomes]
rs16857373	0.85[ASN][1000 genomes]
rs1870926	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2045784	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2169497	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2169565	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2219706	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2399364	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2399369	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2399373	0.85[CEU][hapmap]
rs4682024	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4682025	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4682229	0.85[CEU][hapmap]
rs4682230	0.85[CEU][hapmap]
rs60037602	0.94[ASN][1000 genomes]
rs6437934	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6763050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6805467	0.81[ASN][1000 genomes]
rs72948740	0.83[ASN][1000 genomes]
rs72948795	0.94[ASN][1000 genomes]
rs72948800	0.94[ASN][1000 genomes]
rs7433877	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7629008	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7648752	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7650516	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs768686	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs873132	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs936512	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs969940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9828260	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9828899	0.85[CEU][hapmap]
rs9839231	0.82[EUR][1000 genomes]
rs9881407	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9883216	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110594200-110607600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:110600600-110605400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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