Variant report

Variant	rs1462308
Chromosome Location	chr3:110527504-110527505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10755069	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1350930	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350932	1.00[ASN][1000 genomes]
rs1350979	0.92[ASN][1000 genomes]
rs1381830	0.92[ASN][1000 genomes]
rs1381833	0.92[ASN][1000 genomes]
rs1381834	0.90[ASN][1000 genomes]
rs1381835	0.90[ASN][1000 genomes]
rs1381836	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs1462299	0.92[ASN][1000 genomes]
rs1462326	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1462802	0.92[ASN][1000 genomes]
rs1542513	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1599576	0.96[ASN][1000 genomes]
rs16857350	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs16857358	0.84[ASN][1000 genomes]
rs1870926	0.92[ASN][1000 genomes]
rs2045784	0.90[ASN][1000 genomes]
rs2169497	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2169565	0.92[ASN][1000 genomes]
rs2399364	0.90[ASN][1000 genomes]
rs2399369	0.90[ASN][1000 genomes]
rs4682024	0.96[ASN][1000 genomes]
rs4682025	0.96[ASN][1000 genomes]
rs4682027	0.87[ASN][1000 genomes]
rs60037602	0.92[ASN][1000 genomes]
rs6763050	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs72948740	0.96[ASN][1000 genomes]
rs72948795	0.92[ASN][1000 genomes]
rs72948800	0.92[ASN][1000 genomes]
rs7629008	0.92[ASN][1000 genomes]
rs7650516	0.92[ASN][1000 genomes]
rs768686	0.90[EUR][1000 genomes]
rs936512	0.92[ASN][1000 genomes]
rs969940	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs9828260	1.00[ASN][1000 genomes]
rs9881407	0.96[ASN][1000 genomes]
rs9883216	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010230	chr3:110204439-110588814	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536688	chr3:110204439-110588814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1011034	chr3:110209344-110559021	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv536689	chr3:110209344-110559021	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv829673	chr3:110378069-110530815	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110526000-110529200	Weak transcription	NHLF	lung
2	chr3:110526000-110529800	Weak transcription	HSMM	muscle
3	chr3:110526000-110532400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:110526200-110529200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:110526200-110529200	Weak transcription	NH-A	brain
6	chr3:110526200-110529200	Weak transcription	NHDF-Ad	bronchial
7	chr3:110526200-110529200	Weak transcription	Osteobl	bone
8	chr3:110526200-110532200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:110526400-110527600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:110526400-110528600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:110526400-110531600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:110526800-110529200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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