Variant report

Variant	rs72934100
Chromosome Location	chr3:110696144-110696145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10511291	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493974	0.96[EUR][1000 genomes]
rs1350932	0.82[EUR][1000 genomes]
rs1350979	0.96[EUR][1000 genomes]
rs1381830	0.96[EUR][1000 genomes]
rs1381833	0.96[EUR][1000 genomes]
rs1381834	0.96[EUR][1000 genomes]
rs1381835	0.96[EUR][1000 genomes]
rs1381836	0.96[EUR][1000 genomes]
rs1462299	1.00[EUR][1000 genomes]
rs1462798	0.96[EUR][1000 genomes]
rs1462802	0.96[EUR][1000 genomes]
rs1599576	0.96[EUR][1000 genomes]
rs16857350	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16857373	0.86[EUR][1000 genomes]
rs16857536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1870926	0.96[EUR][1000 genomes]
rs2045784	0.96[EUR][1000 genomes]
rs2169565	0.96[EUR][1000 genomes]
rs2219706	0.96[EUR][1000 genomes]
rs2399364	0.96[EUR][1000 genomes]
rs2399369	0.96[EUR][1000 genomes]
rs4682024	0.96[EUR][1000 genomes]
rs4682025	0.96[EUR][1000 genomes]
rs60037602	1.00[EUR][1000 genomes]
rs6437934	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66624862	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6763050	0.96[EUR][1000 genomes]
rs6805467	0.81[ASN][1000 genomes]
rs72934030	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72934034	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72935934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72935952	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935959	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935966	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935968	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935975	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72935989	0.82[EUR][1000 genomes]
rs72935999	0.82[EUR][1000 genomes]
rs72937905	0.82[EUR][1000 genomes]
rs72948740	1.00[EUR][1000 genomes]
rs72948795	1.00[EUR][1000 genomes]
rs72948800	1.00[EUR][1000 genomes]
rs7433877	0.82[EUR][1000 genomes]
rs7629008	0.96[EUR][1000 genomes]
rs7650516	0.96[EUR][1000 genomes]
rs768686	0.81[ASN][1000 genomes]
rs873132	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs873133	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs936512	0.96[EUR][1000 genomes]
rs969940	0.96[EUR][1000 genomes]
rs9828260	0.96[EUR][1000 genomes]
rs9839231	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9881407	0.96[EUR][1000 genomes]
rs9883216	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1014199	chr3:110293896-110754155	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829674	chr3:110616256-110771049	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv1850918	chr3:110685181-110889974	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv10798	chr3:110694073-110699196	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv3462339	chr3:110694115-110699190	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3462340	chr3:110694159-110699170	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
10	esv3462342	chr3:110694180-110699151	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
11	esv3462343	chr3:110694187-110699116	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
12	esv3462344	chr3:110694256-110699082	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:110683800-110703000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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