Variant report

Variant	rs7611985
Chromosome Location	chr3:23158574-23158575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11129106	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11129107	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13315592	0.88[ASN][1000 genomes]
rs3922415	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4241510	0.91[ASN][1000 genomes]
rs4478098	0.84[ASN][1000 genomes]
rs4858058	0.91[ASN][1000 genomes]
rs55873095	0.90[ASN][1000 genomes]
rs6550726	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6807204	0.82[ASN][1000 genomes]
rs7634983	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7636994	0.85[ASN][1000 genomes]
rs7637269	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7640852	0.85[ASN][1000 genomes]
rs9817819	0.85[ASN][1000 genomes]
rs9877498	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23154400-23158600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:23154400-23159400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:23155200-23159000	Weak transcription	Esophagus	oesophagus
4	chr3:23155800-23160400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:23156200-23158800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:23156200-23159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:23156400-23159400	Weak transcription	HMEC	breast
8	chr3:23156600-23158600	Weak transcription	Fetal Stomach	stomach
9	chr3:23156600-23159000	Enhancers	Fetal Lung	lung
10	chr3:23158200-23159800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:23158400-23158600	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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