Variant report
Variant | rs7636994 |
---|---|
Chromosome Location | chr3:23145106-23145107 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr3:23138261..23141338-chr3:23143225..23146692,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11129106 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11129107 | 0.86[ASN][1000 genomes] |
rs13315592 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1905811 | 0.84[EUR][1000 genomes] |
rs1905812 | 0.85[EUR][1000 genomes] |
rs3922415 | 0.86[ASN][1000 genomes] |
rs6550726 | 0.86[ASN][1000 genomes] |
rs6807204 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs7611985 | 0.85[ASN][1000 genomes] |
rs7634983 | 0.86[ASN][1000 genomes] |
rs7637269 | 0.86[ASN][1000 genomes] |
rs7640852 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7641032 | 0.85[EUR][1000 genomes] |
rs9682247 | 0.83[EUR][1000 genomes] |
rs9817819 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9859062 | 0.86[EUR][1000 genomes] |
rs9877498 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv999882 | chr3:23121533-23257718 | Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv1006921 | chr3:23121967-23155165 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv1010493 | chr3:23124392-23155165 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
4 | nsv834636 | chr3:23138653-23301443 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:23142600-23146200 | Weak transcription | HUVEC | blood vessel |
2 | chr3:23145000-23145600 | Enhancers | Gastric | stomach |