Variant report

Variant	rs9859062
Chromosome Location	chr3:23126495-23126496
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11129106	0.87[EUR][1000 genomes]
rs13315592	0.87[EUR][1000 genomes]
rs1905811	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1905812	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6807204	0.87[EUR][1000 genomes]
rs7636994	0.86[EUR][1000 genomes]
rs7640852	0.87[EUR][1000 genomes]
rs9681041	0.88[EUR][1000 genomes]
rs9682247	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9817819	0.87[EUR][1000 genomes]
rs9821146	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9877498	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006921	chr3:23121967-23155165	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1010493	chr3:23124392-23155165	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23121800-23127200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:23122200-23126600	Weak transcription	A549	lung
3	chr3:23126200-23128200	Enhancers	Fetal Lung	lung
4	chr3:23126400-23127400	Enhancers	Hela-S3	cervix
5	chr3:23126400-23128400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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