Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10049108	0.83[EUR][1000 genomes]
rs12714636	0.96[EUR][1000 genomes]
rs13076821	0.88[CEU][hapmap]
rs13083873	0.83[EUR][1000 genomes]
rs13087042	0.88[CEU][hapmap];0.96[EUR][1000 genomes]
rs13096280	0.88[CEU][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs13101056	0.91[EUR][1000 genomes]
rs1448602	0.96[EUR][1000 genomes]
rs1448608	0.87[CEU][hapmap]
rs4129299	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs4306872	0.87[CEU][hapmap];0.91[EUR][1000 genomes]
rs4464471	0.91[EUR][1000 genomes]
rs6793697	1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs7355953	0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs7612213	0.82[EUR][1000 genomes]
rs7624230	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9309986	0.83[EUR][1000 genomes]
rs9812845	0.91[TSI][hapmap]
rs9813436	0.83[CEU][hapmap]
rs9819476	0.84[CEU][hapmap];0.94[TSI][hapmap]
rs9825885	0.82[EUR][1000 genomes]
rs9834708	0.88[CEU][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs9840636	0.83[EUR][1000 genomes]
rs9858244	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85758600-85760000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:85759000-85760000	Enhancers	Fetal Brain Male	brain
3	chr3:85759000-85760200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:85759200-85760600	Enhancers	Brain Germinal Matrix	brain

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