Variant report

Variant	rs7612047
Chromosome Location	chr3:113269978-113269979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113233651..113236084-chr3:113269132..113272131,7	MCF-7	breast:
2	chr3:113218579..113221300-chr3:113269113..113271776,2	MCF-7	breast:
3	chr3:113232632..113237183-chr3:113263393..113272581,15	MCF-7	breast:
4	chr3:113267576..113271162-chr3:113272689..113275342,3	K562	blood:
5	chr3:113269071..113270721-chr3:113276084..113277953,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163611	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11922598	0.91[EUR][1000 genomes]
rs11924017	1.00[ASN][1000 genomes]
rs12695292	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16861130	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16861157	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16861165	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007579	0.91[ASN][1000 genomes]
rs2254267	1.00[ASN][1000 genomes]
rs2399483	0.91[ASN][1000 genomes]
rs2399486	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2895414	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732799	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4331647	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508746	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580515	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4621301	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58686141	0.91[ASN][1000 genomes]
rs58884094	0.96[ASN][1000 genomes]
rs59631554	0.96[ASN][1000 genomes]
rs59666592	0.91[ASN][1000 genomes]
rs6766534	1.00[ASN][1000 genomes]
rs6769995	1.00[ASN][1000 genomes]
rs6771864	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776729	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6776974	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780755	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782784	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6790846	1.00[ASN][1000 genomes]
rs6805231	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807610	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72946779	0.91[ASN][1000 genomes]
rs72950827	0.96[ASN][1000 genomes]
rs7620700	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7646262	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7653791	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682108	0.91[ASN][1000 genomes]
rs9848190	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852064	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9854538	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113255400-113278800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:113255600-113274800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:113255600-113278400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:113256000-113279000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:113257200-113277400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr3:113257200-113283400	Weak transcription	Primary B cells from cord blood	blood
7	chr3:113261200-113276200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:113262400-113272200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:113262600-113278800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr3:113263600-113270000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:113263800-113273000	Weak transcription	Primary T cells from cord blood	blood
12	chr3:113265000-113271600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:113265400-113271400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr3:113266800-113276400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr3:113267200-113270600	Weak transcription	Stomach Mucosa	stomach
16	chr3:113267400-113276200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:113267400-113278400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:113268200-113279400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:113269200-113270800	Weak transcription	GM12878-XiMat	blood
20	chr3:113269200-113276600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:113269400-113276200	Weak transcription	Primary T helper cells fromperipheralblood	blood

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