Variant report

Variant	rs59666592
Chromosome Location	chr3:113238122-113238123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113216822..113219310-chr3:113237513..113239458,2	MCF-7	breast:
2	chr3:113229615..113239929-chr3:113247196..113257849,45	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072858	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11914782	0.86[EUR][1000 genomes]
rs11919031	0.84[EUR][1000 genomes]
rs11924017	0.91[ASN][1000 genomes]
rs11927007	0.84[EUR][1000 genomes]
rs11929418	0.86[EUR][1000 genomes]
rs12695292	0.91[ASN][1000 genomes]
rs1463641	0.86[EUR][1000 genomes]
rs1463642	0.86[EUR][1000 genomes]
rs16845107	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16860847	0.80[EUR][1000 genomes]
rs16860861	0.84[EUR][1000 genomes]
rs16860919	0.86[EUR][1000 genomes]
rs16861130	0.91[ASN][1000 genomes]
rs16861157	0.91[ASN][1000 genomes]
rs16861165	0.91[ASN][1000 genomes]
rs2007579	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254267	0.91[ASN][1000 genomes]
rs2399483	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2399486	0.91[ASN][1000 genomes]
rs2895414	0.91[ASN][1000 genomes]
rs3732799	0.91[ASN][1000 genomes]
rs3732807	0.86[EUR][1000 genomes]
rs3732808	0.86[EUR][1000 genomes]
rs3732810	0.84[EUR][1000 genomes]
rs3912553	0.86[EUR][1000 genomes]
rs4103250	0.86[EUR][1000 genomes]
rs4331647	0.91[ASN][1000 genomes]
rs4508746	0.91[ASN][1000 genomes]
rs4580515	0.91[ASN][1000 genomes]
rs4621301	0.91[ASN][1000 genomes]
rs56794625	0.84[EUR][1000 genomes]
rs57566915	0.86[EUR][1000 genomes]
rs58686141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58884094	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58918720	0.84[EUR][1000 genomes]
rs59048818	0.86[EUR][1000 genomes]
rs59631554	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60079554	0.84[EUR][1000 genomes]
rs60264945	0.86[EUR][1000 genomes]
rs60706093	0.84[EUR][1000 genomes]
rs60874496	0.84[EUR][1000 genomes]
rs6438139	0.84[EUR][1000 genomes]
rs6764524	0.84[EUR][1000 genomes]
rs6766534	0.91[ASN][1000 genomes]
rs6769995	0.91[ASN][1000 genomes]
rs6771864	0.91[ASN][1000 genomes]
rs6776729	0.91[ASN][1000 genomes]
rs6776974	0.91[ASN][1000 genomes]
rs6780604	0.84[EUR][1000 genomes]
rs6780755	0.91[ASN][1000 genomes]
rs6782784	0.91[ASN][1000 genomes]
rs6790846	0.91[ASN][1000 genomes]
rs6792091	0.86[EUR][1000 genomes]
rs6794923	0.84[EUR][1000 genomes]
rs6795288	0.84[EUR][1000 genomes]
rs6805231	0.91[ASN][1000 genomes]
rs6807610	0.91[ASN][1000 genomes]
rs6808878	0.84[EUR][1000 genomes]
rs72946779	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72950827	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7429847	0.84[EUR][1000 genomes]
rs7612047	0.91[ASN][1000 genomes]
rs7614678	0.84[EUR][1000 genomes]
rs7618598	0.84[EUR][1000 genomes]
rs7618941	0.84[EUR][1000 genomes]
rs7620700	0.87[ASN][1000 genomes]
rs7621337	0.84[EUR][1000 genomes]
rs7622952	0.84[EUR][1000 genomes]
rs7623213	0.86[EUR][1000 genomes]
rs7627145	0.84[EUR][1000 genomes]
rs7629899	0.84[EUR][1000 genomes]
rs7632927	0.84[EUR][1000 genomes]
rs7634713	0.86[EUR][1000 genomes]
rs7636912	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7636986	0.84[EUR][1000 genomes]
rs7640376	0.84[EUR][1000 genomes]
rs7646262	0.91[ASN][1000 genomes]
rs7648620	0.84[EUR][1000 genomes]
rs7650500	0.84[EUR][1000 genomes]
rs7650771	0.84[EUR][1000 genomes]
rs7653791	0.91[ASN][1000 genomes]
rs9682108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9848190	0.91[ASN][1000 genomes]
rs9852064	0.91[ASN][1000 genomes]
rs9854538	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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