Variant report

Variant	rs58918720
Chromosome Location	chr3:113066593-113066594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11914580	0.94[ASN][1000 genomes]
rs11914782	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11919031	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11927007	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11929418	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1463641	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1463642	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16845107	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16860847	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16860861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16860919	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2007579	0.82[EUR][1000 genomes]
rs2399483	0.84[EUR][1000 genomes]
rs3732807	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3732808	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3732810	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3912553	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4103250	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56794625	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57417572	0.95[AFR][1000 genomes]
rs57566915	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58686141	0.84[EUR][1000 genomes]
rs58884094	0.84[EUR][1000 genomes]
rs59048818	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59631554	0.84[EUR][1000 genomes]
rs59666592	0.84[EUR][1000 genomes]
rs60079554	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60264945	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60487041	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60706093	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60874496	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61000519	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6438139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6764524	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6780604	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6792091	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6794923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6795288	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6808878	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72946779	0.84[EUR][1000 genomes]
rs72950827	0.84[EUR][1000 genomes]
rs7429847	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7614678	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7617723	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7618598	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618941	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621031	0.98[AFR][1000 genomes]
rs7621039	0.98[AFR][1000 genomes]
rs7621213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7621337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7622062	0.88[AFR][1000 genomes]
rs7622952	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7623213	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7627145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629899	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7632927	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7634526	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7634713	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7636912	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7636986	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7640376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7644337	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7648620	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650500	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650771	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9682108	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113024600-113081000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:113036600-113081000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:113036800-113073600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:113036800-113081000	Weak transcription	Gastric	stomach
5	chr3:113036800-113088600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:113042000-113080800	Weak transcription	Ovary	ovary
7	chr3:113042200-113116800	Weak transcription	Primary B cells from cord blood	blood
8	chr3:113042400-113103600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:113045400-113097600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:113045600-113073000	Weak transcription	A549	lung
11	chr3:113049400-113068400	Weak transcription	Hela-S3	cervix
12	chr3:113050200-113073000	Weak transcription	Primary T cells from cord blood	blood
13	chr3:113059000-113081000	Weak transcription	Fetal Stomach	stomach
14	chr3:113060000-113073200	Weak transcription	Pancreas	Pancrea
15	chr3:113066000-113067000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:113066200-113067000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:113066200-113073600	Weak transcription	Fetal Kidney	kidney
18	chr3:113066200-113102800	Weak transcription	Aorta	Aorta
19	chr3:113066400-113081000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:113066400-113099000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:113066400-113117600	Weak transcription	Fetal Muscle Leg	muscle

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