Variant report

Variant	rs7634526
Chromosome Location	chr3:113041041-113041042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11914580	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11914782	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11919031	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11927007	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11929418	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1463641	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1463642	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16845107	0.82[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16860847	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16860861	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16860919	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3732807	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3732808	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3732810	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3912553	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4103250	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56794625	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57417572	0.89[AFR][1000 genomes]
rs57566915	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58918720	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59048818	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60079554	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60264945	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60487041	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60706093	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60874496	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61000519	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6438139	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6764524	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6776941	0.85[YRI][hapmap]
rs6780604	0.83[CHB][hapmap];0.93[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6792091	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6794923	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6795288	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6808878	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7429847	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7614678	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7617723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7618598	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7618941	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7621031	0.92[AFR][1000 genomes]
rs7621039	0.92[AFR][1000 genomes]
rs7621213	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7621337	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7622062	0.83[AFR][1000 genomes]
rs7622826	0.88[YRI][hapmap]
rs7622952	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7623213	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7624000	0.82[YRI][hapmap]
rs7627145	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7629899	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7632927	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7634713	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7635203	0.81[AFR][1000 genomes]
rs7636912	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7636986	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7640376	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7644337	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7648620	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7650500	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7650771	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112996400-113046400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:113001200-113044600	Weak transcription	Fetal Kidney	kidney
3	chr3:113007200-113043400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:113013600-113065200	Weak transcription	Left Ventricle	heart
5	chr3:113020800-113041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:113023400-113041600	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:113024600-113046600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:113024600-113081000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:113028600-113053400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:113034400-113046800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:113034800-113044600	Weak transcription	Liver	Liver
12	chr3:113034800-113044600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:113034800-113044800	Weak transcription	A549	lung
14	chr3:113034800-113048400	Weak transcription	Fetal Lung	lung
15	chr3:113034800-113053600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:113034800-113054000	Weak transcription	Psoas Muscle	Psoas
17	chr3:113035000-113044600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:113035000-113050800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:113035000-113052000	Weak transcription	HSMMtube	muscle
20	chr3:113035000-113053000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:113035200-113044800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:113035400-113044600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:113035400-113045000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:113035400-113052800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:113035800-113046400	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:113036400-113044600	Weak transcription	Brain Anterior Caudate	brain
27	chr3:113036400-113053400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr3:113036400-113055600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr3:113036600-113044400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:113036600-113044800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:113036600-113049800	Weak transcription	Fetal Intestine Large	intestine
32	chr3:113036600-113051000	Weak transcription	Thymus	Thymus
33	chr3:113036600-113081000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr3:113036800-113041400	Weak transcription	Ovary	ovary
35	chr3:113036800-113041600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:113036800-113041600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr3:113036800-113041800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr3:113036800-113041800	Weak transcription	Pancreas	Pancrea
39	chr3:113036800-113041800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr3:113036800-113043400	Weak transcription	Fetal Stomach	stomach
41	chr3:113036800-113046000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr3:113036800-113050000	Weak transcription	Right Ventricle	heart
43	chr3:113036800-113050400	Weak transcription	Lung	lung
44	chr3:113036800-113065600	Weak transcription	Aorta	Aorta
45	chr3:113036800-113073600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr3:113036800-113081000	Weak transcription	Gastric	stomach
47	chr3:113036800-113088600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:113037000-113053600	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:113037800-113065600	Weak transcription	HSMM	muscle
50	chr3:113038600-113044600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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