Variant report

Variant	rs6792091
Chromosome Location	chr3:113120950-113120951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs11914580	0.85[ASN][1000 genomes]
rs11914782	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11919031	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11927007	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11929418	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1463641	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1463642	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16845107	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16860847	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16860861	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16860919	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007579	0.84[EUR][1000 genomes]
rs2399483	0.86[EUR][1000 genomes]
rs3732807	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732810	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3912553	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4103250	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56794625	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57566915	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58686141	0.86[EUR][1000 genomes]
rs58884094	0.86[EUR][1000 genomes]
rs58918720	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59048818	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59631554	0.86[EUR][1000 genomes]
rs59666592	0.86[EUR][1000 genomes]
rs59911537	0.91[AFR][1000 genomes]
rs60079554	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60264945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60487041	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60706093	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60874496	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61000519	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61258912	0.91[AFR][1000 genomes]
rs6438139	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6764524	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6780604	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6794923	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6795288	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6808878	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72946779	0.86[EUR][1000 genomes]
rs72950827	0.86[EUR][1000 genomes]
rs7429847	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7614678	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7617723	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7618598	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7618941	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7619717	0.88[AFR][1000 genomes]
rs7621213	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7621337	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7622952	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7623213	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627145	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7629899	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7632927	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7634526	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7634713	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7636912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7636986	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7640376	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7644337	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7648620	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7650500	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7650771	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9682108	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113074400-113184400	Weak transcription	Hela-S3	cervix
2	chr3:113080000-113123800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr3:113080800-113143800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:113081600-113121200	Weak transcription	Ovary	ovary
5	chr3:113081600-113121200	Weak transcription	Pancreas	Pancrea
6	chr3:113090800-113121200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr3:113092400-113134200	Weak transcription	Fetal Kidney	kidney
8	chr3:113093600-113134800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:113096600-113121200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:113098800-113134800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr3:113099000-113134800	Weak transcription	A549	lung
12	chr3:113099600-113144800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr3:113101800-113121200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:113102200-113148800	Weak transcription	Brain Angular Gyrus	brain
15	chr3:113102400-113144400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:113102800-113122600	Weak transcription	Spleen	Spleen
17	chr3:113103200-113126200	Weak transcription	Right Ventricle	heart
18	chr3:113104000-113127400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr3:113105200-113122000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:113105600-113124200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:113106800-113122000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:113106800-113143600	Weak transcription	Dnd41	blood
23	chr3:113107000-113121800	Weak transcription	Fetal Intestine Large	intestine
24	chr3:113107000-113127400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:113107000-113137000	Weak transcription	Esophagus	oesophagus
26	chr3:113107200-113122000	Weak transcription	Gastric	stomach
27	chr3:113107200-113124200	Weak transcription	Fetal Stomach	stomach
28	chr3:113107200-113124200	Weak transcription	GM12878-XiMat	blood
29	chr3:113107200-113124600	Weak transcription	Fetal Intestine Small	intestine
30	chr3:113107200-113145200	Weak transcription	Aorta	Aorta
31	chr3:113107600-113138200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr3:113108600-113125000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr3:113109200-113159800	Weak transcription	Brain Hippocampus Middle	brain
34	chr3:113109400-113121800	Weak transcription	Fetal Lung	lung
35	chr3:113110200-113124400	Weak transcription	Fetal Muscle Trunk	muscle
36	chr3:113110600-113121200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:113111200-113122000	Weak transcription	HSMM	muscle
38	chr3:113111600-113146400	Weak transcription	Brain Substantia Nigra	brain
39	chr3:113112000-113122200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr3:113112200-113148400	Weak transcription	Brain Anterior Caudate	brain
41	chr3:113112400-113121400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr3:113112400-113123200	Strong transcription	Primary T cells from cord blood	blood
43	chr3:113112800-113123800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:113113000-113145600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr3:113113200-113121200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr3:113113200-113122600	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr3:113114000-113143800	Weak transcription	Fetal Thymus	thymus
48	chr3:113114200-113123800	Weak transcription	Small Intestine	intestine
49	chr3:113116000-113121200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr3:113116000-113122800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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