Variant report

Variant	rs7612109
Chromosome Location	chr3:146382191-146382192
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16858669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59709632	1.00[EUR][1000 genomes]
rs60870021	1.00[EUR][1000 genomes]
rs6762881	1.00[EUR][1000 genomes]
rs6786330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806164	1.00[EUR][1000 genomes]
rs6809099	1.00[EUR][1000 genomes]
rs73865810	1.00[EUR][1000 genomes]
rs73865814	1.00[EUR][1000 genomes]
rs73865816	1.00[EUR][1000 genomes]
rs73865826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516386	chr3:146366513-146758405	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv4047	chr3:146368154-146401858	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3369526	chr3:146374303-146400737	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv591937	chr3:146375764-146390316	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv508254	chr3:146379951-146386956	Enhancers	n/a	n/a	inside rSNPs	n/a
6	esv1824574	chr3:146381657-146390316	Enhancers	n/a	n/a	inside rSNPs	n/a
7	nsv591938	chr3:146381657-146390316	Enhancers	n/a	n/a	inside rSNPs	n/a
8	esv1821528	chr3:146381657-146390895	Enhancers	n/a	n/a	inside rSNPs	n/a
9	esv1817157	chr3:146381657-146391374	Enhancers	n/a	n/a	inside rSNPs	n/a
10	esv1819851	chr3:146381657-146391374	Enhancers	n/a	n/a	inside rSNPs	n/a
11	esv1823100	chr3:146381657-146391374	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146382000-146382400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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