Variant report

Variant	rs60870021
Chromosome Location	chr3:146322220-146322221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16858669	1.00[EUR][1000 genomes]
rs59709632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762881	1.00[EUR][1000 genomes]
rs6767834	0.92[AFR][1000 genomes]
rs6786330	1.00[EUR][1000 genomes]
rs6806164	1.00[EUR][1000 genomes]
rs6809099	1.00[EUR][1000 genomes]
rs73865810	1.00[EUR][1000 genomes]
rs73865814	1.00[EUR][1000 genomes]
rs73865816	1.00[EUR][1000 genomes]
rs73865826	1.00[EUR][1000 genomes]
rs73867413	0.93[AFR][1000 genomes]
rs73867423	0.98[AFR][1000 genomes]
rs73867430	0.98[AFR][1000 genomes]
rs7612109	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432489	chr3:146271370-146323969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146320800-146325400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:146321800-146322600	Enhancers	Colon Smooth Muscle	Colon
3	chr3:146322000-146322600	Active TSS	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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