Variant report

Variant	rs7615151
Chromosome Location	chr3:51880614-51880615
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51878113..51880884-chr3:51974906..51977632,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114767	Chromatin interaction
ENSG00000041880	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12639503	0.86[ASW][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs1505404	0.86[AFR][1000 genomes]
rs1587922	0.89[JPT][hapmap]
rs1605069	0.89[JPT][hapmap]
rs1605070	0.89[JPT][hapmap]
rs1983106	0.89[JPT][hapmap]
rs2007607	0.89[JPT][hapmap]
rs2102297	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28776255	0.84[EUR][1000 genomes]
rs28799908	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28854335	0.91[EUR][1000 genomes]
rs28874597	0.84[EUR][1000 genomes]
rs4280629	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4295162	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4687602	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55668803	0.83[EUR][1000 genomes]
rs58932899	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61048512	0.86[EUR][1000 genomes]
rs6446041	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6762083	0.89[JPT][hapmap];0.93[YRI][hapmap]
rs6762371	0.86[ASW][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap]
rs6763197	0.89[JPT][hapmap]
rs6786848	0.86[JPT][hapmap]
rs6789601	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs6795223	0.89[JPT][hapmap]
rs6798914	0.82[JPT][hapmap]
rs6802583	0.89[JPT][hapmap];0.92[YRI][hapmap]
rs6805324	0.86[ASW][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs7623760	0.90[CEU][hapmap];0.93[GIH][hapmap];0.86[EUR][1000 genomes]
rs7629080	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs7635409	0.90[CEU][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7639080	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7644969	0.89[JPT][hapmap]
rs975258	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap]
rs9826967	0.89[JPT][hapmap];0.96[YRI][hapmap]
rs9831886	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9836804	0.84[AFR][1000 genomes]
rs9839703	0.84[EUR][1000 genomes]
rs9840833	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9846102	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs9853511	0.89[JPT][hapmap];0.92[YRI][hapmap]
rs9856180	0.90[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.86[EUR][1000 genomes]
rs9856660	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs986539	0.89[JPT][hapmap]
rs9866552	0.86[ASW][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap]
rs9867269	0.84[EUR][1000 genomes]
rs9867413	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9874046	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs9874547	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs9875459	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9876690	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9880628	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	esv3416846	chr3:51781117-51888179	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1012847	chr3:51811062-52056727	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
5	nsv536571	chr3:51811062-52056727	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
6	nsv1001350	chr3:51860817-51899966	Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7615151	DALRD3	cis	parietal	SCAN
rs7615151	CCDC36	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51879600-51881400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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