Variant report

Variant	rs6786848
Chromosome Location	chr3:51846236-51846237
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs12639503	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1505404	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1857800	0.85[AMR][1000 genomes]
rs1983106	1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AMR][1000 genomes]
rs2007607	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs28451928	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28481670	0.92[ASN][1000 genomes]
rs4280629	0.86[JPT][hapmap]
rs4522758	1.00[CHB][hapmap]
rs55804132	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55886133	0.94[EUR][1000 genomes]
rs55894445	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs56204016	0.92[ASN][1000 genomes]
rs56285190	0.96[AMR][1000 genomes]
rs56662100	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56998832	0.96[AMR][1000 genomes]
rs57173447	0.82[EUR][1000 genomes]
rs57184058	0.96[AMR][1000 genomes]
rs57269235	0.92[AMR][1000 genomes]
rs57407585	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59215394	0.91[AMR][1000 genomes]
rs59857460	0.82[AMR][1000 genomes]
rs61015325	0.91[AMR][1000 genomes]
rs61257131	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6762083	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6762371	1.00[JPT][hapmap]
rs6763197	1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs6768073	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6782139	1.00[AMR][1000 genomes]
rs6795223	1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6795953	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6798175	0.92[ASN][1000 genomes]
rs6798914	1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6802583	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6805324	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6805941	0.92[ASN][1000 genomes]
rs6809548	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73834762	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73834763	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73834764	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73834765	1.00[AMR][1000 genomes]
rs73834766	1.00[AMR][1000 genomes]
rs73838706	1.00[AMR][1000 genomes]
rs7615151	0.86[JPT][hapmap]
rs7627992	0.85[AMR][1000 genomes]
rs7635409	0.86[JPT][hapmap]
rs7639080	0.80[ASN][1000 genomes]
rs7644969	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9826967	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9836804	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9840833	0.80[ASN][1000 genomes]
rs9853511	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9857964	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs986539	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs9866552	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9869265	0.92[ASN][1000 genomes]
rs9874046	0.86[JPT][hapmap]
rs9874547	0.86[JPT][hapmap]
rs9875459	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	esv3416846	chr3:51781117-51888179	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1012847	chr3:51811062-52056727	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
5	nsv536571	chr3:51811062-52056727	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51836800-51847600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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