Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12637540	1.00[CHB][hapmap]
rs12639503	1.00[CHB][hapmap]
rs1394812	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1468019	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089226	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4292222	0.81[ASN][1000 genomes]
rs55983531	0.88[EUR][1000 genomes]
rs56274325	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56298442	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62259718	0.87[EUR][1000 genomes]
rs6762083	1.00[CHB][hapmap]
rs6762371	1.00[CHB][hapmap]
rs6786848	1.00[CHB][hapmap]
rs6802583	1.00[CHB][hapmap]
rs6805324	1.00[CHB][hapmap]
rs7632944	1.00[CHB][hapmap]
rs9815475	1.00[CHB][hapmap]
rs9826967	1.00[CHB][hapmap]
rs9840336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9853511	1.00[CHB][hapmap]
rs9859656	1.00[CHB][hapmap]
rs9866552	1.00[CHB][hapmap]
rs9880623	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1012847	chr3:51811062-52056727	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
3	nsv536571	chr3:51811062-52056727	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51915200-51919400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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