Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:51913969-51914321	MCF10A-Er-Src	breast:	n/a	n/a
2	JUND	chr3:51913978-51914236	HepG2	liver:	n/a	chr3:51914136-51914147
3	FOS	chr3:51913952-51914320	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr3:51913937-51914312	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr3:51913973-51914321	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
IQCF5	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11130297	1.00[YRI][hapmap]
rs12639503	0.82[CHB][hapmap]
rs1394812	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1587921	0.92[YRI][hapmap]
rs2089226	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4292222	0.81[ASN][1000 genomes]
rs4522758	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55983531	0.83[EUR][1000 genomes]
rs56274325	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56298442	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62259718	0.82[EUR][1000 genomes]
rs6762083	1.00[CHB][hapmap]
rs6762371	0.82[CHB][hapmap]
rs6805324	0.82[CHB][hapmap]
rs7632944	1.00[CHB][hapmap]
rs973948	0.86[YRI][hapmap]
rs9815475	0.82[CHB][hapmap]
rs9826967	0.82[CHB][hapmap]
rs9840336	0.89[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9859656	0.82[CHB][hapmap]
rs9860132	0.90[YRI][hapmap]
rs9866552	0.82[CHB][hapmap]
rs9880623	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1012847	chr3:51811062-52056727	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
3	nsv536571	chr3:51811062-52056727	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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