Variant report
| Variant | rs973948 |
|---|---|
| Chromosome Location | chr3:51924722-51924723 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11130297 | 0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1394812 | 0.86[YRI][hapmap] |
| rs1468019 | 0.86[YRI][hapmap] |
| rs1505403 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes] |
| rs1587921 | 1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs323875 | 1.00[MEX][hapmap] |
| rs323883 | 1.00[MEX][hapmap] |
| rs323889 | 1.00[MEX][hapmap] |
| rs323899 | 1.00[MEX][hapmap] |
| rs323900 | 1.00[MEX][hapmap] |
| rs323901 | 1.00[MEX][hapmap] |
| rs433823 | 1.00[MEX][hapmap] |
| rs4687781 | 1.00[AMR][1000 genomes] |
| rs56990501 | 1.00[EUR][1000 genomes] |
| rs60643756 | 1.00[EUR][1000 genomes] |
| rs6445259 | 1.00[EUR][1000 genomes] |
| rs6446153 | 1.00[MEX][hapmap] |
| rs6775662 | 1.00[EUR][1000 genomes] |
| rs6782809 | 1.00[EUR][1000 genomes] |
| rs6784563 | 1.00[EUR][1000 genomes] |
| rs6784653 | 1.00[EUR][1000 genomes] |
| rs6794320 | 1.00[AMR][1000 genomes] |
| rs6797786 | 1.00[EUR][1000 genomes] |
| rs7611413 | 1.00[TSI][hapmap] |
| rs7616436 | 1.00[AMR][1000 genomes] |
| rs7644976 | 1.00[AMR][1000 genomes] |
| rs7652984 | 1.00[EUR][1000 genomes] |
| rs973949 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9840336 | 0.86[YRI][hapmap] |
| rs9860132 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520211 | chr3:51772347-52166147 | Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012847 | chr3:51811062-52056727 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 68 gene(s) | inside rSNPs | diseases |
| 3 | nsv536571 | chr3:51811062-52056727 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 68 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:51924000-51925000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
