Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1394812	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs1468019	1.00[YRI][hapmap]
rs1505403	1.00[AMR][1000 genomes]
rs1587921	0.92[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4687781	1.00[AMR][1000 genomes]
rs56990501	1.00[EUR][1000 genomes]
rs60643756	1.00[EUR][1000 genomes]
rs6445259	1.00[EUR][1000 genomes]
rs6775662	1.00[EUR][1000 genomes]
rs6782809	1.00[EUR][1000 genomes]
rs6784563	1.00[EUR][1000 genomes]
rs6784653	1.00[EUR][1000 genomes]
rs6794320	1.00[AMR][1000 genomes]
rs6797786	1.00[EUR][1000 genomes]
rs7616436	1.00[AMR][1000 genomes]
rs7644976	1.00[AMR][1000 genomes]
rs7652984	1.00[EUR][1000 genomes]
rs973948	0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs973949	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9840336	1.00[YRI][hapmap]
rs9860132	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520211	chr3:51772347-52166147	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1012847	chr3:51811062-52056727	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
3	nsv536571	chr3:51811062-52056727	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51915200-51919400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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