Variant report

Variant	rs7615861
Chromosome Location	chr3:143860822-143860823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143852522..143855348-chr3:143858842..143861138,3	K562	blood:
2	chr3:143852522..143854486-chr3:143858842..143860873,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13078077	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1373866	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1445422	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16855002	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16855026	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34924831	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440218	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6773357	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6778791	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1010213	chr3:143775358-143863149	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv591923	chr3:143776096-143862350	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv591924	chr3:143776096-143864780	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1009018	chr3:143797683-143868350	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv591925	chr3:143821997-144019763	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv1007963	chr3:143836773-144000203	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv536750	chr3:143836773-144000203	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv3382003	chr3:143860818-143861002	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143847600-143861200	Weak transcription	Brain Anterior Caudate	brain
2	chr3:143856400-143861000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:143860400-143861000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:143860400-143861200	Enhancers	Fetal Thymus	thymus
5	chr3:143860600-143861000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:143860600-143861000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr3:143860600-143861000	Enhancers	Fetal Intestine Large	intestine
8	chr3:143860600-143861000	Enhancers	Stomach Smooth Muscle	stomach
9	chr3:143860600-143861000	Enhancers	Osteobl	bone
10	chr3:143860600-143861200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:143860600-143861200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:143860600-143861200	Enhancers	HSMM	muscle
13	chr3:143860600-143861200	Enhancers	NHEK	skin
14	chr3:143860600-143861400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:143860600-143861400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:143860600-143861400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:143860600-143861400	Enhancers	Esophagus	oesophagus
18	chr3:143860600-143861600	Enhancers	NHLF	lung
19	chr3:143860600-143861800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:143860600-143862000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:143860800-143861000	Enhancers	Aorta	Aorta
22	chr3:143860800-143861200	Enhancers	Ovary	ovary
23	chr3:143860800-143861200	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:143860800-143861200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr3:143860800-143861400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:143860800-143861400	Enhancers	Fetal Muscle Leg	muscle
27	chr3:143860800-143861400	Enhancers	Fetal Stomach	stomach
28	chr3:143860800-143861600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:143860800-143861800	Flanking Active TSS	Colon Smooth Muscle	Colon
30	chr3:143860800-143862000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr3:143860800-143862000	Enhancers	Fetal Intestine Small	intestine

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