Variant report

Variant	rs7615962
Chromosome Location	chr3:155888983-155888984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17170	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4076087	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4234310	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4234311	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4533601	0.86[AMR][1000 genomes]
rs4580504	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4611771	0.81[AMR][1000 genomes]
rs4680239	0.85[AMR][1000 genomes]
rs6441039	0.86[AMR][1000 genomes]
rs6441040	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6784723	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7625226	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7625723	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155887600-155893600	Weak transcription	Pancreas	Pancrea
3	chr3:155888200-155889400	Enhancers	Fetal Stomach	stomach
4	chr3:155888800-155889200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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