Variant report

Variant	rs7625723
Chromosome Location	chr3:155894394-155894395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1499051	0.81[EUR][1000 genomes]
rs17170	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1909372	0.81[EUR][1000 genomes]
rs1909375	0.81[EUR][1000 genomes]
rs3935399	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3936002	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4076087	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4234310	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4234311	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4258915	0.97[ASN][1000 genomes]
rs4271877	0.87[EUR][1000 genomes]
rs4453801	0.87[EUR][1000 genomes]
rs4530487	0.80[EUR][1000 genomes]
rs4533601	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4580504	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4611771	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4634068	0.87[EUR][1000 genomes]
rs4680238	0.82[ASN][1000 genomes]
rs4680239	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55858430	0.80[ASN][1000 genomes]
rs6441038	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6441039	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441040	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441046	0.87[EUR][1000 genomes]
rs6441051	0.80[EUR][1000 genomes]
rs6784723	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612532	0.81[AMR][1000 genomes]
rs7615962	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7621586	0.87[EUR][1000 genomes]
rs7625226	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627867	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7638421	0.81[EUR][1000 genomes]
rs9289962	0.97[ASN][1000 genomes]
rs9832745	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155892600-155894600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:155892600-155898000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr3:155892800-155894400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr3:155893400-155894400	Enhancers	Hela-S3	cervix
6	chr3:155893600-155894400	Enhancers	Gastric	stomach
7	chr3:155893600-155894400	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links