Variant report

Variant	rs6441038
Chromosome Location	chr3:155878161-155878162
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155870131..155872683-chr3:155876390..155878620,2	K562	blood:
2	chr3:155874004..155875829-chr3:155876476..155878948,2	K562	blood:
3	chr3:155875929..155878267-chr3:155880209..155881864,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17170	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3935399	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3936002	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4076087	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4234309	0.80[ASN][1000 genomes]
rs4234310	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4234311	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4472010	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4533601	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4580504	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4611771	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4680238	0.91[ASN][1000 genomes]
rs4680239	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55858430	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441039	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6441040	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6784723	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7625226	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7625723	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7627867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9832745	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155876600-155878200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:155876600-155878400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:155877000-155878200	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:155877600-155880000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:155877800-155878200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:155877800-155878400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:155877800-155879000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:155877800-155879600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:155878000-155878200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr3:155878000-155878400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:155878000-155878800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr3:155878000-155879400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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