Variant report

Variant	rs4472010
Chromosome Location	chr3:155871163-155871164
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155871054..155871626-chr3:156799263..156799804,2	K562	blood:
2	chr3:155870131..155872683-chr3:155876390..155878620,2	K562	blood:
3	chr3:155869742..155871357-chr3:155874306..155876247,2	K562	blood:
4	chr3:155869037..155871183-chr3:156875218..156876767,2	K562	blood:

Variant related genes	Relation type
ENSG00000241544	Chromatin interaction
ENSG00000163660	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11922447	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs1353812	1.00[JPT][hapmap]
rs1391889	0.93[CEU][hapmap];1.00[JPT][hapmap]
rs1391890	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs1499056	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs1546229	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs17170	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs3935399	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3936002	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4234310	0.84[EUR][1000 genomes]
rs4234311	0.88[EUR][1000 genomes]
rs4505650	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs4530487	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs4533601	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes]
rs4577423	0.89[CEU][hapmap]
rs4580504	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs4611771	0.88[EUR][1000 genomes]
rs4680238	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs4680239	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs4680249	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs55858430	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441038	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6441039	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs6441042	0.82[CEU][hapmap]
rs6441050	0.92[CEU][hapmap]
rs6784723	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs728382	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs7625226	0.88[EUR][1000 genomes]
rs7627867	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289962	1.00[CHB][hapmap]
rs9832745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9864967	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9866991	0.89[CEU][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155868600-155873200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:155870200-155871400	Weak transcription	Pancreas	Pancrea
3	chr3:155870200-155874200	Weak transcription	Left Ventricle	heart
4	chr3:155870200-155875800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:155870200-155876400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:155870400-155917800	Weak transcription	Aorta	Aorta

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