Variant report

Variant	rs1353812
Chromosome Location	chr3:155907740-155907741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1118418	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1120745	0.98[ASN][1000 genomes]
rs11713991	0.90[ASN][1000 genomes]
rs11915771	0.88[ASN][1000 genomes]
rs11915832	0.98[ASN][1000 genomes]
rs11922447	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1391889	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1391890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1499051	0.98[ASN][1000 genomes]
rs1499052	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1499054	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1499056	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1546229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17170	1.00[JPT][hapmap]
rs1909372	0.93[ASN][1000 genomes]
rs1909373	0.98[ASN][1000 genomes]
rs1909374	0.98[ASN][1000 genomes]
rs1909375	0.94[ASN][1000 genomes]
rs1909376	0.98[ASN][1000 genomes]
rs2173492	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4234309	0.82[EUR][1000 genomes]
rs4258915	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4271877	0.89[ASN][1000 genomes]
rs4333049	0.98[ASN][1000 genomes]
rs4355235	0.94[ASN][1000 genomes]
rs4450760	0.88[ASN][1000 genomes]
rs4453801	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs4472010	1.00[JPT][hapmap]
rs4488791	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4505650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4530487	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4577423	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs4634068	1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[ASN][1000 genomes]
rs4679763	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4679764	0.89[ASN][1000 genomes]
rs4679765	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4680238	0.88[MEX][hapmap]
rs4680249	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6441045	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6441046	1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[ASN][1000 genomes]
rs6441047	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6441050	1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[ASN][1000 genomes]
rs6441051	0.98[ASN][1000 genomes]
rs6775600	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6788238	0.98[ASN][1000 genomes]
rs6806129	0.93[ASN][1000 genomes]
rs728382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7372394	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7611194	0.92[ASN][1000 genomes]
rs7612532	0.87[ASN][1000 genomes]
rs7621586	0.89[ASN][1000 genomes]
rs7627105	0.83[CEU][hapmap]
rs7633871	0.98[ASN][1000 genomes]
rs7634800	0.98[ASN][1000 genomes]
rs7638421	0.98[ASN][1000 genomes]
rs7640712	0.89[ASN][1000 genomes]
rs9289962	0.83[CEU][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9818040	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9832745	1.00[JPT][hapmap]
rs9857202	0.98[ASN][1000 genomes]
rs9864967	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9866991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155905800-155919200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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