Variant report

Variant	rs6441045
Chromosome Location	chr3:155898861-155898862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1118418	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1120745	0.89[ASN][1000 genomes]
rs11713991	0.82[ASN][1000 genomes]
rs11915771	0.80[ASN][1000 genomes]
rs11915832	0.89[ASN][1000 genomes]
rs11922447	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1353812	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1391889	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1391890	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1499051	0.89[ASN][1000 genomes]
rs1499052	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1499054	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1499056	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs1546229	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1909372	0.93[ASN][1000 genomes]
rs1909373	0.89[ASN][1000 genomes]
rs1909374	0.89[ASN][1000 genomes]
rs1909375	0.85[ASN][1000 genomes]
rs1909376	0.89[ASN][1000 genomes]
rs2173492	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4258915	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4271877	0.98[ASN][1000 genomes]
rs4333049	0.89[ASN][1000 genomes]
rs4355235	0.85[ASN][1000 genomes]
rs4450760	0.80[ASN][1000 genomes]
rs4453801	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[ASN][1000 genomes]
rs4488791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4505650	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs4530487	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs4577423	1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[ASN][1000 genomes]
rs4634068	1.00[CHB][hapmap];0.86[CHD][hapmap];0.98[ASN][1000 genomes]
rs4679763	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4679764	0.98[ASN][1000 genomes]
rs4679765	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680238	0.90[CEU][hapmap];0.87[GIH][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs4680249	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[ASN][1000 genomes]
rs6441046	1.00[CHB][hapmap];0.86[CHD][hapmap];0.98[ASN][1000 genomes]
rs6441047	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441050	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[ASN][1000 genomes]
rs6441051	0.89[ASN][1000 genomes]
rs6775600	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6788238	0.89[ASN][1000 genomes]
rs6806129	0.93[ASN][1000 genomes]
rs728382	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7372394	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7611194	0.84[ASN][1000 genomes]
rs7612532	0.96[ASN][1000 genomes]
rs7621586	0.98[ASN][1000 genomes]
rs7627105	1.00[CEU][hapmap]
rs7629439	0.83[MEX][hapmap]
rs7633871	0.89[ASN][1000 genomes]
rs7634800	0.89[ASN][1000 genomes]
rs7638421	0.89[ASN][1000 genomes]
rs7640712	0.98[ASN][1000 genomes]
rs9289962	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9816126	0.83[MEX][hapmap]
rs9818040	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9857202	0.89[ASN][1000 genomes]
rs9864967	0.85[ASN][1000 genomes]
rs9866991	1.00[CHB][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155897800-155899200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:155897800-155899400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:155897800-155899800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:155897800-155899800	Enhancers	NHEK	skin
6	chr3:155898000-155899000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:155898000-155899200	Enhancers	HMEC	breast
8	chr3:155898000-155899400	Enhancers	Hela-S3	cervix
9	chr3:155898200-155899400	Enhancers	Osteobl	bone
10	chr3:155898200-155899600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:155898400-155899800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:155898400-155899800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:155898800-155899000	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links