Variant report

Variant	rs1499052
Chromosome Location	chr3:155923252-155923253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1118418	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1120745	0.93[ASN][1000 genomes]
rs11713991	0.86[ASN][1000 genomes]
rs11915771	0.84[ASN][1000 genomes]
rs11915832	0.93[ASN][1000 genomes]
rs11922447	0.91[ASN][1000 genomes]
rs1353812	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1391889	0.91[ASN][1000 genomes]
rs1391890	0.93[ASN][1000 genomes]
rs1499051	0.93[ASN][1000 genomes]
rs1499054	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499056	0.93[ASN][1000 genomes]
rs1546229	0.93[ASN][1000 genomes]
rs1909372	0.98[ASN][1000 genomes]
rs1909373	0.93[ASN][1000 genomes]
rs1909374	0.93[ASN][1000 genomes]
rs1909375	0.90[ASN][1000 genomes]
rs1909376	0.93[ASN][1000 genomes]
rs2173492	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4258915	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4271877	0.93[ASN][1000 genomes]
rs4333049	0.93[ASN][1000 genomes]
rs4355235	0.90[ASN][1000 genomes]
rs4450760	0.84[ASN][1000 genomes]
rs4453801	0.93[ASN][1000 genomes]
rs4488791	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505650	0.93[ASN][1000 genomes]
rs4530487	0.93[ASN][1000 genomes]
rs4577423	0.93[ASN][1000 genomes]
rs4634068	0.93[ASN][1000 genomes]
rs4679763	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4679764	0.93[ASN][1000 genomes]
rs4679765	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680238	0.82[EUR][1000 genomes]
rs4680249	0.93[ASN][1000 genomes]
rs6441045	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441046	0.93[ASN][1000 genomes]
rs6441047	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441050	0.93[ASN][1000 genomes]
rs6441051	0.93[ASN][1000 genomes]
rs6775600	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788238	0.93[ASN][1000 genomes]
rs6806129	0.98[ASN][1000 genomes]
rs728382	0.93[ASN][1000 genomes]
rs7372394	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611194	0.88[ASN][1000 genomes]
rs7612532	0.91[ASN][1000 genomes]
rs7621586	0.93[ASN][1000 genomes]
rs7627105	0.83[EUR][1000 genomes]
rs7633871	0.93[ASN][1000 genomes]
rs7634800	0.93[ASN][1000 genomes]
rs7638421	0.93[ASN][1000 genomes]
rs7640712	0.93[ASN][1000 genomes]
rs9289962	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9818040	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857202	0.93[ASN][1000 genomes]
rs9864967	0.90[ASN][1000 genomes]
rs9866991	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155918200-155928400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:155919600-155926000	Weak transcription	Aorta	Aorta
3	chr3:155920200-155925800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:155920200-155926000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:155921400-155923600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:155922200-155923600	Weak transcription	Osteobl	bone
7	chr3:155922200-155924800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:155922400-155925000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:155922600-155929800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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