Variant report

Variant	rs6775600
Chromosome Location	chr3:155957733-155957734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1118418	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1120745	0.93[ASN][1000 genomes]
rs11713991	0.86[ASN][1000 genomes]
rs11915771	0.84[ASN][1000 genomes]
rs11915832	0.93[ASN][1000 genomes]
rs11922447	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1353812	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1391889	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1391890	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1499051	0.93[ASN][1000 genomes]
rs1499052	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499054	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499056	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[ASN][1000 genomes]
rs1546229	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1909372	0.98[ASN][1000 genomes]
rs1909373	0.93[ASN][1000 genomes]
rs1909374	0.93[ASN][1000 genomes]
rs1909375	0.90[ASN][1000 genomes]
rs1909376	0.93[ASN][1000 genomes]
rs2173492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3936002	1.00[JPT][hapmap]
rs4258915	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4271877	0.93[ASN][1000 genomes]
rs4333049	0.93[ASN][1000 genomes]
rs4355235	0.90[ASN][1000 genomes]
rs4450760	0.84[ASN][1000 genomes]
rs4453801	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4488791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505650	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4530487	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[ASN][1000 genomes]
rs4533601	1.00[JPT][hapmap]
rs4577423	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4580504	1.00[JPT][hapmap]
rs4634068	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4679763	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4679764	0.93[ASN][1000 genomes]
rs4679765	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680238	0.90[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap]
rs4680239	1.00[JPT][hapmap]
rs4680249	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[ASN][1000 genomes]
rs6441045	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.94[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441046	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6441047	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441050	1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[ASN][1000 genomes]
rs6441051	0.93[ASN][1000 genomes]
rs6784723	1.00[JPT][hapmap]
rs6788238	0.93[ASN][1000 genomes]
rs6806129	0.98[ASN][1000 genomes]
rs728382	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs7372394	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611194	0.88[ASN][1000 genomes]
rs7612532	0.91[ASN][1000 genomes]
rs7621586	0.93[ASN][1000 genomes]
rs7627105	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7633871	0.93[ASN][1000 genomes]
rs7634800	0.93[ASN][1000 genomes]
rs7638421	0.93[ASN][1000 genomes]
rs7640712	0.93[ASN][1000 genomes]
rs9289962	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9818040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857202	0.93[ASN][1000 genomes]
rs9864967	0.90[ASN][1000 genomes]
rs9866991	1.00[CHB][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155952000-155959200	Weak transcription	Aorta	Aorta

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