Variant report

Variant	rs4679763
Chromosome Location	chr3:155897633-155897634
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr3:155897592-155898517	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr3:155897517-155898711	SK-N-SH	brain:	n/a	chr3:155898234-155898242
3	GATA3	chr3:155897630-155898547	SK-N-SH	brain:	n/a	chr3:155898234-155898242
4	TCF12	chr3:155897621-155898507	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000227709	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1118418	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1120745	0.89[ASN][1000 genomes]
rs11713991	0.82[ASN][1000 genomes]
rs11915771	0.80[ASN][1000 genomes]
rs11915832	0.89[ASN][1000 genomes]
rs11922447	0.91[ASN][1000 genomes]
rs1353812	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1391889	0.91[ASN][1000 genomes]
rs1391890	0.89[ASN][1000 genomes]
rs1499051	0.89[ASN][1000 genomes]
rs1499052	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1499054	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1499056	0.89[ASN][1000 genomes]
rs1546229	0.89[ASN][1000 genomes]
rs1909372	0.93[ASN][1000 genomes]
rs1909373	0.89[ASN][1000 genomes]
rs1909374	0.89[ASN][1000 genomes]
rs1909375	0.85[ASN][1000 genomes]
rs1909376	0.89[ASN][1000 genomes]
rs2173492	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4258915	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4271877	0.98[ASN][1000 genomes]
rs4333049	0.89[ASN][1000 genomes]
rs4355235	0.85[ASN][1000 genomes]
rs4450760	0.80[ASN][1000 genomes]
rs4453801	0.98[ASN][1000 genomes]
rs4488791	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4505650	0.89[ASN][1000 genomes]
rs4530487	0.89[ASN][1000 genomes]
rs4577423	0.98[ASN][1000 genomes]
rs4634068	0.98[ASN][1000 genomes]
rs4679764	0.98[ASN][1000 genomes]
rs4679765	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4680238	0.87[EUR][1000 genomes]
rs4680249	0.89[ASN][1000 genomes]
rs6441045	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6441046	0.98[ASN][1000 genomes]
rs6441047	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6441050	0.89[ASN][1000 genomes]
rs6441051	0.89[ASN][1000 genomes]
rs6775600	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6788238	0.89[ASN][1000 genomes]
rs6806129	0.93[ASN][1000 genomes]
rs728382	0.89[ASN][1000 genomes]
rs7372394	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7611194	0.84[ASN][1000 genomes]
rs7612532	0.96[ASN][1000 genomes]
rs7621586	0.98[ASN][1000 genomes]
rs7633871	0.89[ASN][1000 genomes]
rs7634800	0.89[ASN][1000 genomes]
rs7638421	0.89[ASN][1000 genomes]
rs7640712	0.98[ASN][1000 genomes]
rs9289962	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9818040	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9857202	0.89[ASN][1000 genomes]
rs9864967	0.85[ASN][1000 genomes]
rs9866991	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155892600-155898000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:155894400-155898000	Weak transcription	Hela-S3	cervix
4	chr3:155894400-155898400	Weak transcription	Gastric	stomach
5	chr3:155894400-155898600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:155897400-155898000	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links