Variant report

Variant	rs2173492
Chromosome Location	chr3:155958294-155958295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1118418	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1120745	0.91[ASN][1000 genomes]
rs11713991	0.84[ASN][1000 genomes]
rs11915771	0.82[ASN][1000 genomes]
rs11915832	0.91[ASN][1000 genomes]
rs11922447	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1353812	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1391889	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1391890	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1499051	0.91[ASN][1000 genomes]
rs1499052	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1499054	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1499056	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1546229	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1909372	0.95[ASN][1000 genomes]
rs1909373	0.91[ASN][1000 genomes]
rs1909374	0.91[ASN][1000 genomes]
rs1909375	0.87[ASN][1000 genomes]
rs1909376	0.91[ASN][1000 genomes]
rs3936002	1.00[JPT][hapmap]
rs4258915	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4271877	0.91[ASN][1000 genomes]
rs4333049	0.91[ASN][1000 genomes]
rs4355235	0.87[ASN][1000 genomes]
rs4450760	0.82[ASN][1000 genomes]
rs4453801	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4488791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4505650	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4530487	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs4533601	1.00[JPT][hapmap]
rs4577423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4580504	1.00[JPT][hapmap]
rs4634068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4679763	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4679764	0.91[ASN][1000 genomes]
rs4679765	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680238	0.90[CEU][hapmap];1.00[JPT][hapmap]
rs4680239	1.00[JPT][hapmap]
rs4680249	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs6441045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6441046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6441047	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6441050	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs6441051	0.91[ASN][1000 genomes]
rs6775600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6784723	1.00[JPT][hapmap]
rs6788238	0.91[ASN][1000 genomes]
rs6806129	0.95[ASN][1000 genomes]
rs728382	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7372394	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7611194	0.86[ASN][1000 genomes]
rs7612532	0.89[ASN][1000 genomes]
rs7621586	0.91[ASN][1000 genomes]
rs7627105	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7633871	0.91[ASN][1000 genomes]
rs7634800	0.91[ASN][1000 genomes]
rs7638421	0.91[ASN][1000 genomes]
rs7640712	0.91[ASN][1000 genomes]
rs9289962	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9818040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9857202	0.91[ASN][1000 genomes]
rs9864967	0.87[ASN][1000 genomes]
rs9866991	1.00[CHB][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155952000-155959200	Weak transcription	Aorta	Aorta
2	chr3:155958200-155959000	Enhancers	HUVEC	blood vessel

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