Variant report

Variant	rs7627105
Chromosome Location	chr3:155964466-155964467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1118418	0.83[EUR][1000 genomes]
rs1352404	1.00[ASN][1000 genomes]
rs1353812	0.83[CEU][hapmap]
rs1499052	0.83[EUR][1000 genomes]
rs1499054	0.83[EUR][1000 genomes]
rs2173492	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4488791	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4679765	0.87[CEU][hapmap]
rs4680238	0.90[CEU][hapmap]
rs6441045	1.00[CEU][hapmap]
rs6441047	0.81[EUR][1000 genomes]
rs6775600	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7372394	0.80[EUR][1000 genomes]
rs9289962	1.00[CEU][hapmap]
rs971877	1.00[ASN][1000 genomes]
rs9818040	1.00[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155959400-155971400	Weak transcription	Aorta	Aorta
2	chr3:155964400-155965000	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links