Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:155891080..155892817-chr3:156167708..156168458,4	MCF-7	breast:
2	chr3:155891752..155892645-chr3:156192096..156193523,3	MCF-7	breast:
3	chr3:155891772..155892464-chr3:156227676..156228429,2	K562	blood:
4	chr3:155891642..155892738-chr3:156099937..156100944,4	MCF-7	breast:
5	chr3:155891797..155892723-chr3:156192017..156192958,3	MCF-7	breast:
6	chr3:155891766..155892703-chr3:156100012..156100931,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1118418	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1353812	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1499052	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1499054	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17170	0.91[ASN][1000 genomes]
rs2173492	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3935399	0.83[ASN][1000 genomes]
rs3936002	0.82[ASN][1000 genomes]
rs4076087	0.97[ASN][1000 genomes]
rs4234310	0.91[ASN][1000 genomes]
rs4234311	0.97[ASN][1000 genomes]
rs4488791	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4533601	0.97[ASN][1000 genomes]
rs4580504	0.97[ASN][1000 genomes]
rs4611771	0.93[ASN][1000 genomes]
rs4679763	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4679765	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4680238	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4680239	0.97[ASN][1000 genomes]
rs6441039	0.97[ASN][1000 genomes]
rs6441040	0.97[ASN][1000 genomes]
rs6441045	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6441047	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6775600	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6784723	0.97[ASN][1000 genomes]
rs7372394	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7625226	0.97[ASN][1000 genomes]
rs7625723	0.97[ASN][1000 genomes]
rs9289962	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9818040	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155887600-155893600	Weak transcription	Pancreas	Pancrea
3	chr3:155889200-155893800	Weak transcription	Fetal Heart	heart
4	chr3:155891200-155892800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:155892200-155892600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:155892200-155892800	Enhancers	Brain Hippocampus Middle	brain
7	chr3:155892400-155892600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:155892400-155892600	Enhancers	Gastric	stomach
9	chr3:155892400-155892600	Flanking Active TSS	Hela-S3	cervix

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