Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155891080..155892817-chr3:156167708..156168458,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11718399	0.83[ASW][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap]
rs11922447	0.82[CEU][hapmap]
rs13073556	0.90[MEX][hapmap]
rs1391889	0.82[CEU][hapmap]
rs1488425	0.90[MEX][hapmap]
rs1499055	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs1499056	0.82[CEU][hapmap]
rs1546229	0.82[CEU][hapmap]
rs17170	0.85[CEU][hapmap]
rs1984473	0.90[MEX][hapmap]
rs3936002	0.81[MEX][hapmap]
rs4359774	0.83[ASW][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.95[MKK][hapmap];0.84[TSI][hapmap];0.94[YRI][hapmap]
rs4453801	0.81[MEX][hapmap]
rs4472010	0.82[CEU][hapmap]
rs4533601	0.81[GIH][hapmap];0.81[MEX][hapmap]
rs4577423	0.81[MEX][hapmap]
rs4580504	0.86[MEX][hapmap]
rs4634068	0.81[MEX][hapmap]
rs4679761	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs4680232	0.81[MEX][hapmap]
rs4680239	0.81[GIH][hapmap];0.86[MEX][hapmap]
rs4680244	0.96[CEU][hapmap];0.81[JPT][hapmap]
rs4680249	0.82[CEU][hapmap]
rs56231269	0.84[AFR][1000 genomes]
rs6441050	0.82[CEU][hapmap]
rs6764861	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs728382	0.82[CEU][hapmap]
rs963226	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs963227	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs9814661	0.83[ASW][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.94[MKK][hapmap];0.82[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs9832745	0.82[CEU][hapmap]
rs9842620	0.81[MEX][hapmap]
rs9856468	0.90[MEX][hapmap];0.84[TSI][hapmap]
rs9864967	0.82[CEU][hapmap]
rs9866991	0.82[CEU][hapmap]
rs9882088	0.94[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6441042	SCARNA7	cis	cerebellum	SCAN
rs6441042	SLC33A1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155870400-155917800	Weak transcription	Aorta	Aorta
2	chr3:155887600-155893600	Weak transcription	Pancreas	Pancrea
3	chr3:155889200-155893800	Weak transcription	Fetal Heart	heart
4	chr3:155891000-155891200	Enhancers	Pancreatic Islets	Pancreatic Islet

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