Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10222673	0.84[CEU][hapmap]
rs1120745	0.81[AMR][1000 genomes]
rs11713991	0.81[AMR][1000 genomes]
rs11915832	0.80[AMR][1000 genomes]
rs11922447	0.86[CEU][hapmap]
rs1391889	0.86[CEU][hapmap]
rs1499055	0.92[CEU][hapmap];0.88[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1499056	0.85[CEU][hapmap]
rs1546229	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs17170	0.82[CEU][hapmap]
rs1814218	0.84[CEU][hapmap]
rs1909373	0.81[AMR][1000 genomes]
rs1909376	0.81[AMR][1000 genomes]
rs2017971	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4333049	0.81[AMR][1000 genomes]
rs4505650	0.80[AMR][1000 genomes]
rs4577423	0.81[CEU][hapmap]
rs4680239	0.81[CEU][hapmap]
rs4680244	0.92[CEU][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4680248	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4680249	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs62286207	0.99[ASN][1000 genomes]
rs6441042	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs6441050	0.85[CEU][hapmap]
rs6764861	1.00[CEU][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs728382	0.82[CEU][hapmap]
rs7373565	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7620808	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7633871	0.80[AMR][1000 genomes]
rs7634800	0.81[AMR][1000 genomes]
rs963226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9864967	0.82[CEU][hapmap]
rs9866991	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155959400-155971400	Weak transcription	Aorta	Aorta

Quick Search: