Variant report

Variant	rs2017971
Chromosome Location	chr3:155947021-155947022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1120745	0.84[AMR][1000 genomes]
rs11713991	0.84[AMR][1000 genomes]
rs11915771	0.80[AMR][1000 genomes]
rs11915832	0.83[AMR][1000 genomes]
rs11922447	0.81[AMR][1000 genomes]
rs1391889	0.82[AMR][1000 genomes]
rs1391890	0.82[AMR][1000 genomes]
rs1499051	0.82[AMR][1000 genomes]
rs1499055	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1499056	0.81[AMR][1000 genomes]
rs1546229	0.84[AMR][1000 genomes]
rs1909373	0.84[AMR][1000 genomes]
rs1909374	0.82[AMR][1000 genomes]
rs1909375	0.82[AMR][1000 genomes]
rs1909376	0.84[AMR][1000 genomes]
rs4333049	0.84[AMR][1000 genomes]
rs4505650	0.83[AMR][1000 genomes]
rs4530487	0.82[AMR][1000 genomes]
rs4680244	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4680248	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680249	0.83[AMR][1000 genomes]
rs6441050	0.82[AMR][1000 genomes]
rs6441051	0.81[AMR][1000 genomes]
rs6764861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6788238	0.82[AMR][1000 genomes]
rs728382	0.81[AMR][1000 genomes]
rs7373565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7611194	0.80[AMR][1000 genomes]
rs7620808	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7633871	0.83[AMR][1000 genomes]
rs7634800	0.84[AMR][1000 genomes]
rs7638421	0.82[AMR][1000 genomes]
rs963226	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs963227	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9864967	0.81[AMR][1000 genomes]
rs9866991	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155936600-155951000	Weak transcription	Aorta	Aorta
2	chr3:155942000-155951200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:155945800-155954400	Weak transcription	Pancreas	Pancrea

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