Variant report

Variant	rs10222673
Chromosome Location	chr3:155992509-155992510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1814218	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4143532	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs4680244	0.86[MEX][hapmap]
rs4680252	0.94[JPT][hapmap]
rs4680253	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6764861	0.85[CEU][hapmap];0.86[MEX][hapmap]
rs963226	0.85[CEU][hapmap];0.86[MEX][hapmap]
rs963227	0.84[CEU][hapmap]
rs9870819	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10222673	SLC33A1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155983400-155993000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155992400-155992800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr3:155992400-155993200	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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