Variant report

Variant	rs4679761
Chromosome Location	chr3:155868039-155868040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155867627..155868538-chr3:156225916..156226586,2	K562	blood:
2	chr3:155728335..155729330-chr3:155867949..155869190,6	MCF-7	breast:
3	chr3:155867932..155869023-chr3:156099965..156100884,3	K562	blood:
4	chr3:155867887..155868494-chr3:156167558..156168383,2	MCF-7	breast:
5	chr3:155867950..155869167-chr3:156391442..156392069,3	MCF-7	breast:
6	chr3:155862023..155863592-chr3:155867276..155869925,2	K562	blood:
7	chr3:155867882..155869031-chr3:156227090..156228302,7	MCF-7	breast:
8	chr3:155864395..155866159-chr3:155866850..155868427,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000243926	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10936024	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11709514	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11716256	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11718399	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13073556	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13078555	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13093154	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs1488425	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1488426	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1488427	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1906543	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1984473	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4234308	0.93[CHB][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs4261831	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4359773	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4359774	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4605502	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4679760	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4680232	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4680233	0.91[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4680234	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4680235	0.89[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4680237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56231269	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62284939	0.86[ASN][1000 genomes]
rs6441034	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs6441035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441036	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6441042	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs6761966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6778035	0.94[CHB][hapmap]
rs6780500	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6788449	0.86[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6793964	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7617796	0.86[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7618820	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7629439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7633081	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7645641	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7652981	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9289961	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9789968	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9814661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9816126	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs9838322	0.94[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9842620	0.85[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9856468	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9861320	0.86[CEU][hapmap];0.94[CHB][hapmap]
rs9862153	0.96[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9869649	0.94[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs9870793	0.96[ASN][1000 genomes]
rs9882088	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155862200-155868400	Enhancers	Fetal Brain Male	brain
2	chr3:155863000-155869800	Weak transcription	Left Ventricle	heart
3	chr3:155863600-155868800	Weak transcription	Ovary	ovary
4	chr3:155865600-155870200	Enhancers	Fetal Heart	heart
5	chr3:155865800-155869800	Weak transcription	Pancreas	Pancrea
6	chr3:155866000-155870200	Enhancers	Brain Hippocampus Middle	brain
7	chr3:155866200-155868400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:155866400-155868200	Enhancers	Adipose Nuclei	Adipose
9	chr3:155866400-155869200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:155866600-155868200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:155866600-155868600	Enhancers	Fetal Stomach	stomach
12	chr3:155866600-155869000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:155866800-155868400	Enhancers	Brain Substantia Nigra	brain
14	chr3:155866800-155868400	Enhancers	Fetal Lung	lung
15	chr3:155866800-155868400	Enhancers	Small Intestine	intestine
16	chr3:155866800-155868400	Enhancers	GM12878-XiMat	blood
17	chr3:155866800-155868800	Enhancers	Rectal Smooth Muscle	rectum
18	chr3:155866800-155869000	Enhancers	Brain Angular Gyrus	brain
19	chr3:155866800-155869200	Enhancers	Colon Smooth Muscle	Colon
20	chr3:155866800-155870000	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr3:155866800-155870200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:155866800-155870200	Enhancers	Brain Cingulate Gyrus	brain
23	chr3:155867000-155868800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr3:155867000-155868800	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr3:155867000-155868800	Weak transcription	Fetal Thymus	thymus
26	chr3:155867200-155868400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:155867200-155868400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:155867200-155868400	Enhancers	HUVEC	blood vessel
29	chr3:155867200-155869000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr3:155867200-155870000	Weak transcription	Aorta	Aorta
31	chr3:155867400-155868800	Enhancers	Stomach Smooth Muscle	stomach
32	chr3:155867400-155869200	Enhancers	Brain Anterior Caudate	brain
33	chr3:155867600-155868400	Enhancers	HSMMtube	muscle
34	chr3:155867600-155869000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:155867600-155869800	Weak transcription	K562	blood
36	chr3:155867800-155868400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr3:155867800-155868400	Enhancers	NHDF-Ad	bronchial
38	chr3:155867800-155868400	Enhancers	Osteobl	bone
39	chr3:155867800-155870000	Weak transcription	Right Atrium	heart
40	chr3:155868000-155868400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:155868000-155868400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:155868000-155868400	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr3:155868000-155868800	Weak transcription	Psoas Muscle	Psoas
44	chr3:155868000-155869800	Weak transcription	Fetal Muscle Leg	muscle

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