Variant report

Variant	rs9870793
Chromosome Location	chr3:155864846-155864847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155864395..155866159-chr3:155866850..155868427,2	K562	blood:
2	chr3:155848600..155850678-chr3:155862966..155865880,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10936024	0.92[ASN][1000 genomes]
rs11709514	0.88[ASN][1000 genomes]
rs11716256	0.88[ASN][1000 genomes]
rs11718399	0.91[ASN][1000 genomes]
rs13073556	0.91[ASN][1000 genomes]
rs13093154	0.83[ASN][1000 genomes]
rs1488425	0.88[ASN][1000 genomes]
rs1488426	0.80[ASN][1000 genomes]
rs4234308	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4261831	0.89[ASN][1000 genomes]
rs4359773	0.99[ASN][1000 genomes]
rs4359774	0.99[ASN][1000 genomes]
rs4605502	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4679760	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4679761	0.96[ASN][1000 genomes]
rs4680232	0.91[ASN][1000 genomes]
rs4680233	0.91[ASN][1000 genomes]
rs4680234	0.85[ASN][1000 genomes]
rs4680235	0.89[ASN][1000 genomes]
rs4680237	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56231269	0.93[ASN][1000 genomes]
rs62284939	0.90[ASN][1000 genomes]
rs6441034	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6441035	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6441036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6761966	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6780500	0.91[ASN][1000 genomes]
rs6788449	0.88[ASN][1000 genomes]
rs6793964	0.92[ASN][1000 genomes]
rs7617796	0.89[ASN][1000 genomes]
rs7618820	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7629439	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7633081	0.89[ASN][1000 genomes]
rs9289961	0.88[ASN][1000 genomes]
rs9814661	0.99[ASN][1000 genomes]
rs9816126	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9838322	0.85[ASN][1000 genomes]
rs9842620	0.90[ASN][1000 genomes]
rs9856468	0.99[ASN][1000 genomes]
rs9862153	0.92[ASN][1000 genomes]
rs9869649	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9882088	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592085	chr3:155827634-156012679	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155861200-155865600	Weak transcription	Pancreas	Pancrea
2	chr3:155861200-155866600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:155861200-155866800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:155862200-155868400	Enhancers	Fetal Brain Male	brain
5	chr3:155862400-155866000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:155862400-155866800	Weak transcription	Right Atrium	heart
7	chr3:155863000-155869800	Weak transcription	Left Ventricle	heart
8	chr3:155863200-155865000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:155863600-155868800	Weak transcription	Ovary	ovary
10	chr3:155864000-155866800	Weak transcription	Colon Smooth Muscle	Colon
11	chr3:155864000-155866800	Weak transcription	Fetal Muscle Leg	muscle
12	chr3:155864200-155867000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:155864400-155866800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:155864600-155865600	Weak transcription	Aorta	Aorta
15	chr3:155864600-155866600	Weak transcription	Fetal Stomach	stomach
16	chr3:155864600-155866800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:155864800-155866000	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:155864800-155866800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links