Variant report

Variant	rs1906543
Chromosome Location	chr3:155805993-155805994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:155803528..155806801-chr3:155807011..155810632,3	MCF-7	breast:
2	chr3:155804123..155806644-chr3:155808208..155811120,2	MCF-7	breast:
3	chr3:155802547..155805092-chr3:155805319..155806843,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10936024	0.89[EUR][1000 genomes]
rs11709514	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11716256	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11718399	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12493813	0.95[ASN][1000 genomes]
rs13073556	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13078555	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1386956	0.89[ASN][1000 genomes]
rs1386957	0.88[ASN][1000 genomes]
rs1386958	0.89[ASN][1000 genomes]
rs1488425	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1488426	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1488427	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1825909	0.85[ASN][1000 genomes]
rs1984473	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4261831	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4359773	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4359774	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4605502	0.83[EUR][1000 genomes]
rs4679760	0.85[EUR][1000 genomes]
rs4679761	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4680231	0.95[ASN][1000 genomes]
rs4680232	0.91[EUR][1000 genomes]
rs4680233	0.91[EUR][1000 genomes]
rs4680234	0.83[EUR][1000 genomes]
rs4680235	0.82[EUR][1000 genomes]
rs4680237	0.84[EUR][1000 genomes]
rs56231269	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6441035	0.84[EUR][1000 genomes]
rs6778199	0.95[ASN][1000 genomes]
rs6780500	0.80[EUR][1000 genomes]
rs6788449	0.83[EUR][1000 genomes]
rs6793964	0.86[EUR][1000 genomes]
rs7613000	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7617796	0.83[EUR][1000 genomes]
rs7618820	0.82[EUR][1000 genomes]
rs7645641	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7652981	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289961	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9683366	0.95[ASN][1000 genomes]
rs9789968	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9814661	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9838322	0.81[EUR][1000 genomes]
rs9842620	0.81[EUR][1000 genomes]
rs9856468	0.84[EUR][1000 genomes]
rs9862153	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9882088	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155800200-155811800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155805600-155806800	Weak transcription	Fetal Brain Male	brain

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