Variant report

Variant	rs1825909
Chromosome Location	chr3:155805945-155805946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12493813	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13078555	0.83[ASN][1000 genomes]
rs1386956	0.81[ASN][1000 genomes]
rs1386958	0.81[ASN][1000 genomes]
rs1488427	0.82[ASN][1000 genomes]
rs1906543	0.85[ASN][1000 genomes]
rs1984473	0.83[ASN][1000 genomes]
rs4680231	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6778199	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7613000	0.84[ASN][1000 genomes]
rs7645641	0.82[ASN][1000 genomes]
rs7652981	0.83[ASN][1000 genomes]
rs9683366	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9789968	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155800200-155811800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:155805600-155806800	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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