Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13078555	0.96[ASN][1000 genomes]
rs13093154	0.83[CHB][hapmap]
rs1386956	0.91[ASN][1000 genomes]
rs1386957	0.88[ASN][1000 genomes]
rs1386958	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1488426	0.83[ASN][1000 genomes]
rs1488427	0.95[ASN][1000 genomes]
rs1825909	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1906543	0.95[ASN][1000 genomes]
rs1984473	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes]
rs4234308	0.81[CEU][hapmap]
rs4680231	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680232	0.80[MEX][hapmap]
rs6441034	0.88[MEX][hapmap]
rs6441036	0.84[CEU][hapmap]
rs6761966	0.83[CEU][hapmap]
rs6778199	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613000	0.97[ASN][1000 genomes]
rs7629439	0.84[CEU][hapmap];0.89[MEX][hapmap]
rs7645641	0.95[ASN][1000 genomes]
rs7652981	0.96[ASN][1000 genomes]
rs9683366	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9789968	0.96[ASN][1000 genomes]
rs9816126	0.89[MEX][hapmap]
rs9862554	0.82[CEU][hapmap]
rs9869649	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs12493813	VEPH1	cis	cerebellum	SCAN
rs12493813	NFE2L3	trans	lymphoblastoid	seeQTL
rs12493813	OTOL1	cis	parietal	SCAN
rs12493813	SCARNA7	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155820400-155822200	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:155820400-155824800	Weak transcription	Aorta	Aorta
3	chr3:155821000-155823000	Enhancers	Pancreas	Pancrea
4	chr3:155821000-155827600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:155821200-155822200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search: