Variant report

Variant	rs1488427
Chromosome Location	chr3:155825734-155825735
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10936024	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11709514	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11716256	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11718399	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12493813	0.95[ASN][1000 genomes]
rs13073556	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13078555	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13093154	0.83[CHB][hapmap]
rs1386956	0.86[ASN][1000 genomes]
rs1386957	0.85[ASN][1000 genomes]
rs1386958	0.86[ASN][1000 genomes]
rs1488425	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1488426	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1825909	0.82[ASN][1000 genomes]
rs1906543	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1984473	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4261831	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4359773	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4359774	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4605502	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4679760	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4679761	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4680231	0.95[ASN][1000 genomes]
rs4680232	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4680233	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4680234	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4680235	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4680237	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56231269	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441035	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6778035	0.83[CEU][hapmap]
rs6778199	0.95[ASN][1000 genomes]
rs6780500	0.87[EUR][1000 genomes]
rs6788449	0.89[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6793964	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7613000	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7617796	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7618820	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7633081	0.85[EUR][1000 genomes]
rs7645641	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652981	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9289961	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9683366	0.95[ASN][1000 genomes]
rs9789968	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9814661	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9838322	0.88[EUR][1000 genomes]
rs9842620	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs9856468	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9861320	0.89[CEU][hapmap]
rs9862153	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9882088	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv592084	chr3:155751484-155830578	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155821000-155827600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:155823000-155827800	Weak transcription	Pancreas	Pancrea
3	chr3:155825600-155826800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:155825600-155827200	Weak transcription	Aorta	Aorta

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