Variant report

Variant	rs7616215
Chromosome Location	chr3:46205686-46205687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2087726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2172247	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2201150	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4683184	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850642	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Behcet's disease	23291587	GWAS catalog

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7616215	CCR3	cis	Whole Blood	GTEx
rs7616215	CCR1	cis	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46202800-46206200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:46203600-46206200	Enhancers	Placenta	Placenta
3	chr3:46204000-46206000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:46204400-46205800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:46204400-46205800	Enhancers	Fetal Thymus	thymus
6	chr3:46204400-46205800	Enhancers	Lung	lung
7	chr3:46204400-46206000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:46204600-46205800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:46204600-46205800	Enhancers	Placenta Amnion	Placenta Amnion
10	chr3:46204600-46205800	Flanking Active TSS	NHEK	skin
11	chr3:46204800-46205800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr3:46204800-46205800	Flanking Active TSS	Hela-S3	cervix
13	chr3:46204800-46205800	Flanking Active TSS	HMEC	breast
14	chr3:46205000-46205800	Enhancers	Fetal Lung	lung
15	chr3:46205200-46206000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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